Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18233602_18233725_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18233602 - 18233725

Intron Length:

124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTAAGTCTG

5'SS Class:

major

3'SS Sequence:

TTTTCTTTATAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTTTCTTTATAA

Flanking Amino Acid:

PQKSLEEFQDVYIVMELMDA

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

65.7

45.7

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

77.1

0.61

84.2

29.5

Minor 5ss

39.8

-1.1

51.2

45.1

Minor BPS

68.3

0.57

1.6

80.49

35.3

Associated Gene:

Gene:

MAPK8

Ensembl Gene ID:

ENSAPLG00000016448

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018731

18229414 - 18252195

22782

ENSAPLT00000017167

18229414 - 18252195

22782