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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18233865_18238512_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18233865 - 18238512
Intron Length:
4648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
HLHSAGIIHRDLKPSNIVVK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018731
18229414 - 18252195
22782
ENSAPLT00000017167
18229414 - 18252195
22782