Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18238679_18243067_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18238679 - 18243067

Intron Length:

4389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTCAGCAAA

5'SS Class:

major

3'SS Sequence:

GCTACAAACATAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACAAAC

U12 Branch Point Sequence:

TGTGCTACAAAC

Flanking Amino Acid:

VILGMGYKENVDLWSVGCIM

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.3

65.4

42.2

Major BPS

59.6

0.24

65.2

28.2

Major PPT

51.8

0.04

44.1

35.5

Minor 5ss

34.6

-1.8

2.8

41.3

44.8

Minor BPS

44.8

-0.4

1.9

57.74

40.6

Associated Gene:

Gene:

MAPK8

Ensembl Gene ID:

ENSAPLG00000016448

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017167

18229414 - 18252195

22782