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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18238679_18243497_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18238679 - 18243497
Intron Length:
4819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGCAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTATGTTAATA
Flanking Amino Acid:
VILGMGYKENVDIWSVGCIM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.3
65.4
42.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
34.6
-1.8
2.8
41.3
44.8
Minor BPS
59.6
0.3
2.1
75.33
36.5

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018731
18229414 - 18252195
22782