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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18243140_18245576_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
18243140 - 18245576
Intron Length:
2437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
TGTGAAACCTTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TTTTTCTTAGCT
Flanking Amino Acid:
CHKILFPGRDYIDQWNKVIE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.9
-0
1.3
46.6
44.1
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
57.8
0.18
1
53
41.4
Minor 5ss
91.9
1.41
1
91
28.3
Minor BPS
80.2
1.03
1.4
95.66
30.6

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017167
18229414 - 18252195
22782