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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18247429_18250725_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18247429 - 18250725
Intron Length:
3297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCCCTGCATT
Flanking Amino Acid:
EREHTIEEWKELIYKEVMDL
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.1
0.61
0.9
73
36.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
59.1
0.37
1.9
82.5
38.8

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018731
18229414 - 18252195
22782
ENSAPLT00000017167
18229414 - 18252195
22782