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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18250804_18251234_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18250804 - 18251234
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTTAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTATCTGCAACT
Flanking Amino Acid:
GVIRGQPAPLAQVQQ*
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.5
36.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
80.6
0.69
0.8
76.8
32
Minor 5ss
35.5
-1.7
2.9
43.7
44.1
Minor BPS
49.9
0.07
2.2
73.89
42.8

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018731
18229414 - 18252195
22782
ENSAPLT00000017167
18229414 - 18252195
22782