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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_182545_182702_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182545 - 182702
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTTTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
CTGTGAATAACT
Flanking Amino Acid:
REKNQEKYNQTTPPFYRIED
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.3
72.7
38.2
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
78.7
0.65
0.8
70.3
36.3
Minor 5ss
28.4
-2.5
3
35.8
40.9
Minor BPS
46.8
-0.1
2.3
69.87
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306