About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18266281_18269862_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18266281 - 18269862
Intron Length:
3582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATGGAATT
Flanking Amino Acid:
KMEDPVTMMEGTSLVQHLMT
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
43.1
-0.4
2.1
62.82
41.7

Associated Gene:

Gene:
ARHGAP22
Ensembl Gene ID:
ENSAPLG00000016416
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038455
18260713 - 18403291
142579
ENSAPLT00000017133
18261056 - 18401658
140603