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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18277415_18282385_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18277415 - 18282385
Intron Length:
4971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GGTTTCTAAATT
Flanking Amino Acid:
FDCGEKPLFDSNTDVHTVAS
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86
0.81
0.7
81.2
29.1
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
63.1
0.49
1.7
76.88
40

Associated Gene:

Gene:
ARHGAP22
Ensembl Gene ID:
ENSAPLG00000016416
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017133
18261056 - 18401658
140603
ENSAPLT00000038455
18260713 - 18403291
142579