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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1833744_1940049_R

Intron Information:

Intron Rank:
143224
Intron Class:
major
Intron Phase:
Intron Coordinates:
1833744 - 1940049
Intron Length:
106306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATAATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.4
0.64
0.9
74.6
39
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
51.1
0.03
1.6
60.92
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044637
1833733 - 1996785
163053