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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18387160_18401546_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18387160 - 18401546
Intron Length:
14387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTGTAATT
Flanking Amino Acid:
VLKMAECFFEARSKSLVMGE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
34.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.4
0.84
0.8
85.1
34.9
Minor 5ss
40.9
-1
3.4
58.3
46.6
Minor BPS
63.9
0.52
2
82.98
39.3

Associated Gene:

Gene:
ARHGAP22
Ensembl Gene ID:
ENSAPLG00000016416
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017133
18261056 - 18401658
140603