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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18387160_18403113_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18387160 - 18403113
Intron Length:
15954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTGTAATT
Flanking Amino Acid:
LSPRIRQARRARSKSLVMGE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.4
0.84
0.8
85.1
34.9
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
63.9
0.52
2
82.98
39.3

Associated Gene:

Gene:
ARHGAP22
Ensembl Gene ID:
ENSAPLG00000016416
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038455
18260713 - 18403291
142579