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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18427417_18428015_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18427417 - 18428015
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGATC
5'SS Class:
major
3'SS Sequence:
TTTGTGGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGTGGTAACA
Flanking Amino Acid:
IKKNLNGKPAEEARLALEQL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
76.9
38.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71
0.47
1.1
65.6
44.4
Minor 5ss
42.4
-0.8
3.2
60.2
44.5
Minor BPS
46.7
-0.2
2.6
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391