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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18428120_18429524_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18428120 - 18429524
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTACTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
SVYLLSQTDVRTLRNIIGSG
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81
0.7
0.8
81.8
29
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391