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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18433897_18435520_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18433897 - 18435520
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
AGAAGGCACTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAGAA
U12 Branch Point Sequence:
TGCTCCAGAAGA
Flanking Amino Acid:
GTTVICDDSEKELNAVMLKM
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
77.7
37
Major BPS
52.4
0.06
1.1
48.9
36.6
Major PPT
40.2
-0.5
1.6
32.6
40.8
Minor 5ss
31.2
-2.1
4.2
47.6
48.1
Minor BPS
47.8
-0.1
2
62.12
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391