About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18436626_18438957_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18436626 - 18438957
Intron Length:
2332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAC
5'SS Class:
strong_major
3'SS Sequence:
ACAATGTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
CCTTTCTTCACA
Flanking Amino Acid:
ELNLKLDLLKSLLRILESPK
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
83.3
28.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
65.2
0.34
1
57.6
42.4
Minor 5ss
36.1
-1.6
2.7
45.4
42.7
Minor BPS
62.4
0.38
1.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391