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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18439445_18439516_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18439445 - 18439516
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCAT
5'SS Class:
major
3'SS Sequence:
TTCAAAAGATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTACTTTCAAAA
Flanking Amino Acid:
SYFKEIKPEMVNKLPASAYR
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
64.9
42.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
51.6
0.04
1.1
49.6
42.5
Minor 5ss
33.7
-1.9
3.1
39.2
46.1
Minor BPS
50.1
-0
1.6
63.07
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391