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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18439569_18442579_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18439569 - 18442579
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TAAGCCTTATAC
Flanking Amino Acid:
AYRLWENPEEKWEMRDTVIV
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
51.6
0.03
1.8
61.95
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391