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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18451779_18452149_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18451779 - 18452149
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GTACTGTTGACT
Flanking Amino Acid:
STEEVEFQPLDIMEPEGEVL
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.9
42.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
31.7
-2.1
3.5
48.3
47.3
Minor BPS
49.3
0.03
2.1
69.78
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391