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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18452335_18454318_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18452335 - 18454318
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TCTTGGTGAATT
Flanking Amino Acid:
INNQTLGSAKMRYLQPLPGS
Intron Amino Acid Position:
1167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
78.1
0.63
0.8
72.5
32.3
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
47
-0.1
2.5
72.16
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391