Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18454551_18456264_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18454551 - 18456264

Intron Length:

1714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

AGTTGCTTCAGA

Flanking Amino Acid:

CSNFQAVQLQGEDQYSEHNP

Intron Amino Acid Position:

1244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

79.7

35.4

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

81.6

0.71

0.8

80.5

31.5

Minor 5ss

47.1

-0.3

2.6

65.5

45.8

Minor BPS

46.3

-0.2

2.4

62.1

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017115

18422873 - 18469263

46391