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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18456417_18456971_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18456417 - 18456971
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCACACAT
5'SS Class:
major
3'SS Sequence:
TGATCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTCCTAGAAT
Flanking Amino Acid:
EVDGRLVAKEIGINSRDSST
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
62.5
43.8
Major BPS
79
0.72
1
69
38.9
Major PPT
72.3
0.5
1
69.9
41.2
Minor 5ss
34.6
-1.8
3.1
48.4
47.1
Minor BPS
67.9
0.65
1.8
88.47
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391