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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18457396_18458458_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18457396 - 18458458
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
TCAGCAAATATT
Flanking Amino Acid:
KLMRHMGGYQLLAYLLKRKT
Intron Amino Acid Position:
1396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
35.3
-1
2.2
50.3
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391