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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18458612_18459507_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18458612 - 18459507
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
AGAGCAGTAAAA
Flanking Amino Acid:
AFQYILCNFELWMKAPENLD
Intron Amino Acid Position:
1447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
40.9
-0.6
2.2
50.17
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391