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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18459582_18460420_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18459582 - 18460420
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGCTTTTAAAA
Flanking Amino Acid:
SHLAEILQSSRDGCHNAEVA
Intron Amino Acid Position:
1471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.3
44.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.7
0.85
0.8
84.7
29
Minor 5ss
38.7
-1.3
3.1
52.2
44.6
Minor BPS
53
0.09
1.3
57.3
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391