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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18463534_18464304_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18463534 - 18464304
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTTATT
Flanking Amino Acid:
ICSDKTHLSSEAQQETFLAL
Intron Amino Acid Position:
1578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
70.3
0.72
1.5
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391