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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18466805_18468320_F

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18466805 - 18468320
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTCTGTT
5'SS Class:
weak_major
3'SS Sequence:
GGTGACTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GCTTTAGTAATG
Flanking Amino Acid:
QGHPLELLLEASPEDASSEQ
Intron Amino Acid Position:
1866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
70
40.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
62.2
0.28
1.1
53.5
45.7
Minor 5ss
46.6
-0.3
3
67.6
43.4
Minor BPS
45
-0.5
2.2
52.3
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391