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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18468415_18468973_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18468415 - 18468973
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAAGGGA
5'SS Class:
major
3'SS Sequence:
GTATTATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CTTGTATTATCT
Flanking Amino Acid:
AMDVFHVISQRNGDPRGTSE
Intron Amino Acid Position:
1897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1
56.2
36.9
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
76.3
0.59
0.9
66.9
43.9
Minor 5ss
24.2
-3
3.4
27.9
41.9
Minor BPS
49.6
0.05
2
72.14
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016398
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017115
18422873 - 18469263
46391