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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18507891_18517336_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18507891 - 18517336
Intron Length:
9446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
75.5
0.57
0.9
69.5
36
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
55.1
0.14
1.5
65.14
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016371
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017087
18507828 - 18531728
23901