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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18518301_18518946_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18518301 - 18518946
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTCTAAAAAT
Flanking Amino Acid:
PWVLADYHSQTLNLSNPHTF
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
35.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
28.4
-2.5
2.9
33.4
41.6
Minor BPS
47.2
-0.1
2
67.1
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016371
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017087
18507828 - 18531728
23901