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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18519860_18524129_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18519860 - 18524129
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTCCATTTAACA
Flanking Amino Acid:
PFTQTFCSLQGGSFDVADRM
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
70.5
0.46
1
65.1
39.8
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
59.9
0.31
1.5
66.59
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016371
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017087
18507828 - 18531728
23901