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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18524284_18525872_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18524284 - 18525872
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTTTAATT
Flanking Amino Acid:
FLTNANHFELGCMQDGTVLG
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.9
74.3
36.2
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
83.1
1.12
1
93.31
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016371
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017087
18507828 - 18531728
23901