About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18531027_18531542_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18531027 - 18531542
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCACTT
5'SS Class:
major
3'SS Sequence:
TCCTTTGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATG
Flanking Amino Acid:
ISNFGQIPKQLFTKPHPSRN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68.1
42.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.3
0.66
0.8
72.5
37.7
Minor 5ss
49.5
-0
2.9
74.2
42
Minor BPS
58.6
0.13
1.6
63.62
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016371
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017087
18507828 - 18531728
23901