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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18532712_18534474_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18532712 - 18534474
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATAC
Flanking Amino Acid:
CCFGNYGSEKNMTTFECMAD
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
81.2
29.8
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
49.1
-0
1.9
64.56
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028673
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043887
18531543 - 18542796
11254