About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18534634_18538419_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18534634 - 18538419
Intron Length:
3786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTTTCCCCACCA
Flanking Amino Acid:
DKVKHLNLRQALYGHSQAVT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
78.4
0.64
0.8
71.7
34.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
53.5
0.11
2.2
76.63
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028673
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043887
18531543 - 18542796
11254