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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18538600_18541854_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18538600 - 18541854
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATCT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GGATCTTGAAAC
Flanking Amino Acid:
LCSVAINNSTGDIASCAGSY
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
36.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
81.3
0.7
0.9
75.5
38.4
Minor 5ss
42.8
-0.8
3.1
63.5
41.4
Minor BPS
52.8
0.07
1.5
59.56
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028673
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043887
18531543 - 18542796
11254