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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18556200_18566719_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18556200 - 18566719
Intron Length:
10520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATAACTGTAATT
Flanking Amino Acid:
LLKPQRKLILPKIAEENLTY
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
76.8
0.6
0.9
69.4
41.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
51.8
0.13
2
71.72
39.6

Associated Gene:

Gene:
VSTM4
Ensembl Gene ID:
ENSAPLG00000016366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018028
18556074 - 18589020
32947