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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18566477_18566719_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18566477 - 18566719
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTACAGTGGATT
Flanking Amino Acid:
LLKPQRKLILLSCSHCVYKF
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
100
1.24
0.5
100
0
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
42.1
-0.5
2.2
63.16
40.9

Associated Gene:

Gene:
VSTM4
Ensembl Gene ID:
ENSAPLG00000016366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044138
18565388 - 18589843
24456