Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18567737_18573152_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18567737 - 18573152

Intron Length:

5416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCATTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

TGTCCCTCACAC

Flanking Amino Acid:

KHYLVKCPQNSSGETVTSVT

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

75.1

35.1

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

76.4

0.59

0.9

69.5

35.4

Minor 5ss

30.7

-2.2

3.7

46.1

49.1

Minor BPS

48.2

-0.1

1.9

62.74

41.9

Associated Gene:

Gene:

VSTM4

Ensembl Gene ID:

ENSAPLG00000016366

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044138

18565388 - 18589843

24456

ENSAPLT00000018028

18556074 - 18589020

32947

ENSAPLT00000017080

18509277 - 18584612

75336