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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18573187_18576319_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18573187 - 18576319
Intron Length:
3133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAA
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
QSLLNKRRSTVKHYLVKCPQ
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
54.3
0.11
1.4
49.1
46.3
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
VSTM4
Ensembl Gene ID:
ENSAPLG00000016366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044138
18565388 - 18589843
24456
ENSAPLT00000018028
18556074 - 18589020
32947
ENSAPLT00000017080
18509277 - 18584612
75336