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Intron Name: Anas_platyrhynchos_platyrhynchos_6_18576428_18577961_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18576428 - 18577961

Intron Length:

1534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

GCTTGCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTGAG

U12 Branch Point Sequence:

TGAGCATCACCT

Flanking Amino Acid:

KNHEAWKFFEDLYVYAVFVC

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

75.1

35.1

Major BPS

52.3

0.06

1.5

52.7

43.2

Major PPT

77.9

0.63

0.9

73.4

37.1

Minor 5ss

32.3

-2

3.1

41.7

Minor BPS

44.3

-0.3

2.1

63.32

46.1

Associated Gene:

Gene:

VSTM4

Ensembl Gene ID:

ENSAPLG00000016366

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044138

18565388 - 18589843

24456

ENSAPLT00000018028

18556074 - 18589020

32947

ENSAPLT00000017080

18509277 - 18584612

75336