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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18578031_18584143_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18578031 - 18584143
Intron Length:
6113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
SNGTAATEIRVISSKTSDDP
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
1
72.3
41.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
VSTM4
Ensembl Gene ID:
ENSAPLG00000016366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044138
18565388 - 18589843
24456
ENSAPLT00000018028
18556074 - 18589020
32947
ENSAPLT00000017080
18509277 - 18584612
75336