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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18584543_18588612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18584543 - 18588612
Intron Length:
4070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GGATTCTCACCA
Flanking Amino Acid:
STDCGASPGMDICEALNVTV
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
73.2
39.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
48.2
-0.1
1.8
57.91
41.1

Associated Gene:

Gene:
VSTM4
Ensembl Gene ID:
ENSAPLG00000016366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018028
18556074 - 18589020
32947