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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18623237_18623832_R

Intron Information:

Intron Rank:
150828
Intron Class:
major
Intron Phase:
Intron Coordinates:
18623237 - 18623832
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GGTTTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
77.6
32.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80
0.68
0.8
78
30.8
Minor 5ss
35.6
-1.6
3.3
46.2
49.1
Minor BPS
82.4
1.1
1.1
89.46
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028638
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024807
18611681 - 18630461
18781