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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18624815_18629734_R

Intron Information:

Intron Rank:
150830
Intron Class:
major
Intron Phase:
Intron Coordinates:
18624815 - 18629734
Intron Length:
4920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATGTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.2
81.4
32.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
35.7
-1.6
3.3
48.3
41.3
Minor BPS
71.5
0.67
1.3
74.55
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028638
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024807
18611681 - 18630461
18781