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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18650375_18660292_F

Intron Information:

Intron Rank:
127028
Intron Class:
major
Intron Phase:
Intron Coordinates:
18650375 - 18660292
Intron Length:
9918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTATC
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.4
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
38.8
-1.3
3
45.8
42.6
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018465
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038198
18649795 - 18660584
10790