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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18650375_18671122_F

Intron Information:

Intron Rank:
127027
Intron Class:
major
Intron Phase:
Intron Coordinates:
18650375 - 18671122
Intron Length:
20748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTATC
5'SS Class:
major
3'SS Sequence:
TTTTGAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.4
39.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.2
0.61
0.9
71.5
38.4
Minor 5ss
38.8
-1.3
3
45.8
42.6
Minor BPS
67.2
0.62
1.3
80.96
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018465
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018712
18649795 - 18671638
21844