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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18653880_18659871_R

Intron Information:

Intron Rank:
136943
Intron Class:
major
Intron Phase:
Intron Coordinates:
18653880 - 18659871
Intron Length:
5992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTGCTCTGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
48.3
-0.2
1.6
51.82
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040462
18653373 - 18661745
8373