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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18704016_18704219_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18704016 - 18704219
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTCCCCATCA
Flanking Amino Acid:
NKKESLEIQQSLSRAVGPTG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.4
0.59
0.8
75.1
28.6
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
49
-0
2.1
68.46
43.7

Associated Gene:

Gene:
DRGX
Ensembl Gene ID:
ENSAPLG00000016357
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017069
18693620 - 18720290
26671